At rOpenSci’s virtual HQ we’re busy planning out several exciting projects for the coming year thanks to the generous 180k grant from Sloan. In the interest of maintaining transparency with our community here are additional details of what we hope to accomplish and how we’ll measure our successes. We have also posted a full copy of our proposal over at figshare. Objectives for the year a) Focus on identifying shortcomings, strengthening our core products, and working to link existing tools through interoperable data structures and visualization routines.

Today we are pleased to announce that rOpenSci has been awarded a generous 180K grant from the Alfred P. Sloan foundation. This funding will allow us to develop a whole new suite of tools and provide scientists with general purpose toolkits to access various kinds of scientific data. We will also be traveling a whole bunch this year and running workshops at several conferences and universities. If you’d like us to speak to your research group, please get in touch.

The USGS recently released a way to search for and get species occurrence records for the USA. The service is called BISON (Biodiversity Information Serving Our Nation). The service has a web interface for human interaction in a browser, and two APIs (application programming interface) to allow machines to interact with their database. One of the APIs allows you to search and retrieve data, and the other gives back maps as either a heatmap or a species occurrence map.

We’ve been busy We have been busy hacking away at code and our website. Here is an update on what we’ve been up to. Packages rplos/alm PLoS provides two different API services: the Search API and ALM API. As their names suggest, the search API lets you search and get text from their papers and associated metadata. The ALM API allows you to get article level metrics data on PLoS papers.

A guest blog post by Steve Moss Why Python? A little background! I started using Python in the summer of 2010. I had applied for the Master of Research postgraduate degree in Computational Biology at the University of York. They teach the programming portion of their course using Python. I thought it might be useful to learn it, before starting, to give me a bit of a head start. From the beginning, it was clear to me, that Python was something different, in relation to all the other languages I had previously used.